Promoter Report - Breast cancer 1, early onset

PM000011204	Promoter : Breast cancer 1, early onset

Identifier	HSA_10338_BRCA1
Gene	Human BRCA1
Synonyms	breast cancer 1, early onset, BRCA1, PSCP, RNF53, IRIS, BRCAI, BRCC1
Chromosomal Location	17q21
Comments	Build HSA_Mar2006: Chr.17 38529920..38540920 (REVERSE) Score Points: 134 (92%)

Features [hide]

ChIP-on-chip FRAGMENT
(8 entries)

Factor	First Nucleotide Position	Last Nucleotide Position
Sp1	10634	10980
Sp1	10634	>11001
Sp1	126	1397
Sp1	6182	6420
Sp1	8871	10372
HNF4a_hep	9517	10498
HNF4a_panc	9517	10498
HNF4a_panc	9682	10398

[more ...]

TRANSFAC SITE
(12 entries)

Binding Factor(s)	Binding Site	First Nucleotide Position	Last Nucleotide Position
Sp1(h)	R22168	9620	9643
HMGI(m.s.)	R23098	9779	9819
(GABP-alpha(m))2:(GABP-beta1(m))2, (GABP-alpha(m))2:(GABP-beta2(m))2, GABP-alpha(h), GABP-beta(h), GABP-gamma1(h), GABP-alpha(m), c-Ets-2(m), GABP-alpha(r), GABP-beta(r)	R21799	9783	9810
FBP(h)	R21857	9786	9812
RPA1(h), RPA3(h), RPA2(h)	R21856	9786	9812
	R22180	9789	9841
Fra-2(h), c-Jun(h)	R21775	9803	9832
CREB1(h)	R21774	9803	9832
(CREB1(h))2, ATF-1(h):CREB1(h)	R21796	9811	9821
	R21852	9821	9838
53BP1(h)	R21815	9943	9966
Sp1(h)	R22169	10860	10883

[more ...]

TSS
(9 entries)

Source	Identifier	Nucleotide Position
Fantom	T17R024BEFEC	9869
Fantom	T17R024BEFD6	9891
ENSEMBL	ENST00000309486 (9)	9927
dbTSS	PRS04646	10008
Fantom	T17R024BEF58	10017
Fantom	T17R024BEF32	10055
dbTSS	HEP03909	10055
ENSEMBL	ENST00000393691	10264
Fantom	T17R024BEC0A	10863

[more ...]

SNP
(55 entries)

Source	Identifier	Nucleotide Change	Nucleotide Position
dbSNP	rs1554064	G to C	244
dbSNP	rs1554063	A to G	250
dbSNP	rs1554062	C to A	329
Ensembl	ENSSNP11239280	C to T	474
dbSNP	rs2175957	A to C	573
dbSNP	rs9903725	G to A	1353
dbSNP	rs12951842	C to T	1463
Ensembl	ENSSNP11239279	C to A	1725
Ensembl	ENSSNP1335363	A to C	2431
dbSNP	rs11655212	C to T	2520
dbSNP	rs11651905	A to T	2603
dbSNP	rs6503726	A to G	2653
dbSNP	rs11650848	T to C	2696
dbSNP	rs35382092	G to A	2776
dbSNP	rs34002196	G to A	2819
dbSNP	rs34239244	T to C	3530
dbSNP	rs35406806	C to T	3541
dbSNP	rs8079162	G to C	4011
dbSNP	rs11653069	G to A	4018
dbSNP	rs4793206	T to C	5103
dbSNP	rs1877837	C to T	5641
dbSNP	rs2011530	A to G	5715
dbSNP	rs1814833	G to A	5794
dbSNP	rs34672900	C to T	5845
Ensembl	ENSSNP11239277	T to C	6317
dbSNP	rs34493401	A to G	6633
dbSNP	rs33925201	T to C	6713
dbSNP	rs9892210	T to A	6756
dbSNP	rs9889706	C to A	6757
dbSNP	rs41479751	G to C	6910
dbSNP	rs7211045	A to G	6923
dbSNP	rs1709431	C to T	6941
dbSNP	rs1709430	C to T	6973
dbSNP	rs35931760	G to A	7111
dbSNP	rs36062500	G to A	7279
dbSNP	rs33945274	C to T	7322
dbSNP	rs12947782	T to C	7513
dbSNP	rs35981166	G to T	7558
dbSNP	rs34410138	T to C	7625
dbSNP	rs799910	C to G	7834
dbSNP	rs8077035	G to A	7861
dbSNP	rs4793204	T to C	8097
dbSNP	rs799909	C to T	8168
dbSNP	rs36221749	C to T	8341
dbSNP	rs799908	T to C	8479
dbSNP	rs36221744	G to A	8662
dbSNP	rs799907	G to C	8670
dbSNP	rs11655505	C to T	9018
dbSNP	rs799906	A to G	9279
dbSNP	rs3092986	A to G	9399
dbSNP	rs8176072	T to A	9451
dbSNP	rs8176073	A to G	9562
dbSNP	rs8176074	G to A	9630
dbSNP	rs799905	C to G	10208
dbSNP	rs8176076	C to T	10443

[more ...]

Repeat
(45 entries)

Name	First Nucleotide Position	Last Nucleotide Position
AluSc	2628	2810
AluSg	10389	10631
AluSx	3295	3605
AluSx	1444	1752
AluSx	4765	5062
AluY	5606	5913
AluY	3645	3835
AluY	2307	2626
AluY	7328	7635
dust	2597	2629
dust	6309	6317
dust	6546	6560
dust	1726	1740
dust	5046	5063
dust	10602	10634
dust	3978	3997
dust	3645	3657
dust	922	929
dust	5891	5913
dust	3577	3635
dust	2782	2815
dust	7328	7354
dust	2437	2447
FLAM_C	5065	5188
FLAM_C	6421	6560
L1M5	4330	4521
LTR12C	6862	7327
LTR12C	7636	8711
MER5A	1926	2013
MIR	3191	3290
MIR	2909	2994
MIRb	4538	4757
MIRb	2813	2904
THER1_MD	2215	2304
trf	5893	5913
trf	10601	10630
trf	7877	8109
trf	7723	7811
trf	7723	8086
trf	7683	7745
trf	2425	2815
trf	2782	2814
trf	6874	7195
trf	3583	3633
trf	7087	7132

[more ...]

CpG ISLAND
(3 entries)

First Nucleotide Position	Last Nucleotide Position	% GC Content	Count of CpGs	Observed to Expected Ratio of CpGs
10196	10716	55	25	0.7
8292	9393	62	72	0.7
<1	276	59	38	0.7

Sequence Information [hide]

	SNP TSS CHIP-ON-CHIP TRANSFAC SITE
Sequence	gcgtcctaat caaccatccc aaacggcagt tggaagaaag ttcttgcagg cctgtgcttg 60 ggcttgaacg ctgggccggc cgctgcgctc tgtggctccc tgcaggcctg cggatcggcc 120 agggggctcc gatccttttg gaccgaggct gaagcaacgg ctgcaccaga gaaggccttc 180 tggctgaagg tggaagtgca cggggtccgc agaaccgcct aaggcgtctt caggcgtggg 240 ttaggaacta gcaggctctc ctttgtgctt cattccatgg ccagagcaag acacgtgggc 300 aagcccaaag ccaggggctg ggaaagtacc ctccacccac aacgaaacca tggcaagggg 360 tgggtgcatg tagggctgag gaattggggc caatagtcta tctatcccgt gaggagacct 420 gctgtggggg ttgcacagcc tgggtctgca agcttcactg ccctcggcct gggcgtcctg 480 tgctcctttg gcctctctgg gttaggaaag tatccctttt atctctgcaa aggtcagagt 540 cccagtgtct gctttcaaat ataaaaccag ctattggggg tatgaccctg aactgtatga 600 gggccgccct ttcagtaatt ctctctccag gagtgagaac ctccctttct caattttagg 660 ttagatgggt ctgagtgtgt ttagtgcagt tcatggttga gcaggaagat tagaaataag 720 gacatagaga caactatttt cttggtgtta aactcatttt aaacaaagtg gaaagtaaag 780 gatttagtag ggaaatcctt tcaccttggc aaaagtatag tctatctggt cacaactgcc 840 acagcatgat ccttggtggc ttggcacaag cattccctgt cctccatcaa gcccataatg 900 tccctcagta attccactgc attttttttg cagctgctgt gtgctggagc tgtggggaac 960 ccctcggtaa tctcttgtct gctttttagg aactcctatc tccagatctt cttttacttc 1020 ccaagccacc ccacttcttt gaaaggtctg caggcttgtc tacctcttct cagcttgctc 1080 tgcatgcctt ggggaagctc ttaaagcatg gatcatgaag gaggggggcg gaggagaggg 1140 aaatgcatgt ttccacaaat ggaccatgag cccaccaggc aggctctaga tggggaaaaa 1200 aaccccttac attatcatgt gacttgtaca agaaaaaagg tacctgcaaa gggtcaaggg 1260 accagagagg agaacttgag aggtattctg gaggaggcga cttttgatgt gagctttcta 1320 ggtgagtaaa gggcattgta gatgaaagga ctggctggta agtggccagc agatagaaat 1380 acaggctgag ctcaggggag ggtacaccca gaggtgggga ggaaggtagg aagtgaaaaa 1440 ggaggctggg cgtggtggct cacgcctgta atcctagcac tttgagtgtc cgaggcaggc 1500 ggatcacttg aggtcaggag tttgagacca gcctggccaa catggtgaaa ccccatctct 1560 actaaaacta caaaaattag ctgggtgtgg tggtgtgcgc ctgtagtccc agctactcag 1620 gaggctaagg tatgataatt gcttgaaccc gggaggcgga gcttgcagtg agcgaagatc 1680 atgccactgc actccagcct gggtaacaga gtgagatcct gtctcaaaaa aaaaaaaaaa 1740 ggaagtgaaa aaggaaaggg agaaggccag aatggaaagg agctaaagac agactgagca 1800 aggcagagtt ggaggccagc gcaggaaggg ctcaaaacat ttgcaaggac agttcacatc 1860 ccactggtat gtcagcttag atttaaagca ctacccagag ttattcaaag ccagacagga 1920 gaactgcagg catcagaatg ccctggggac gggtccaaaa tgcagaatcc taagccccta 1980 aagagtcact ctacgatgag atccaagaat ttgggctgga tcccacttct cctgtcccct 2040 gccctcacca ctgaggacct aaagcataat aaaaggggac aatctctgcc ctaaataatc 2100 ccttttggca gttactttct gttttcaaac ttcaaatctg tcctctggga ctaacctagg 2160 agatgaggga taagggaatt aacatttatg gaaaatggag gaacccacat aggcacctgt 2220 gttcacctaa tattccttac caagcagtgg gtgctgccat tatctccatt gtatggatga 2280 gaaaacaggc ttaaaagagg ttaatcgacc aggtgcggtg gctcacgcct gtaatcccag 2340 cactttggga gaccgaggac agcggatcac gatgtcaggg gatcgagacc atcctggcta 2400 acacagtgaa accccgtctc tactaaaaat acaaagaaaa aaaaaaatta gctgggcgtg 2460 ctggtgggcg cctgtagtcc aagctactca ggaagctgag gcaggagaat ggcgtgaacc 2520 cgggaggcag agcttgcagt gagccaagat cgcgccacta cactccagcc tgggcgacag 2580 agcgagactc catctcaaaa aaaaaaataa aataaaataa agaaaaaaag aattagctgg 2640 gcatggttgc gcacgtctgt agtcccaagc tactcgggag gctgaagcag gagaattgct 2700 tgaacccgga ggcagaggtt gcagtgagcc aagatcacgc cactgcactc cagcctggtg 2760 acagagcgag acttcgtctc taaaaaaaga aaaagaaaaa ggaaaaaaaa aaaaagaggt 2820 taagtaactt gggcgggggc ggccagagcc acagaactag taagtgatag aagtaggatt 2880 ctcacctagt tctttctgat gctagttgga gaggcagctt tgttcagtgg gttttagagc 2940 cagggctgct taggtttgga tctcacctct atcccatatt atttgctggg acttccttaa 3000 aacagtgtgg ggctcagggc aacccaatga gtatggggct aagacagctg ccaccgagtc 3060 agcatttttc acaggcccct cgagatagca ctgaagacag aaatttctaa attgaatttt 3120 attgatgttc aggaaagaga agtcagtcac aacccccctt ggccctcagc cccaagcaga 3180 gagcccagag tgtgtgacct caggcaagta ccaaaacctc tctgtgcctc agttcctcat 3240 ctgtaaattg gggcaaatgt cagttgatgt gaggattaaa tatgatgata tcctggctgg 3300 gcacaatggc tcatgcctgt aatcccataa ctttgggagg ctgaggccgc tggattgctt 3360 gaggccagga gttcaaaacc agcctggcca acatggtgaa accccatttc taccaaatat 3420 acaaaaatta gccaggcatg gtggtgcatg cctgtagtcc cagctacttg ggaggctgag 3480 gcacaagaat cgcttcaacc caggaagcag aggttgcagt gagctgagat tgcgccactg 3540 cactgcagcc tggatgacag agtgagactc tgtcccaaaa caaaaagaaa agcaaagcaa 3600 agaaagaaaa ggagaaaaga aaagaaaata aaaagctgat atcctttttt tttttttgag 3660 acggagtctc gctctgtcac cgaggctgaa gtgcagtggc acgatctcgg ctcactgcaa 3720 gctccgcctc ctgggttcac gccattctcc tgcctcagcc tcccaagtag ctaggactac 3780 aggcgcctgc tgccacattt ggctaatttt ttgtattttt agtagagacg gggttcaata 3840 aaatgaagcg aaatggggat gaaacataat gaaccacagc agttttctgt ccctactgtt 3900 cccacccttc tggggagcaa gatttcaatg gaatcttctg gtgcttctcc cgacatctct 3960 tgcatgtctc attgttttta ttattattat tattattttg agacacaaat gagctaagcg 4020 ctacttcgaa ttattaaagc ccatatcact ggagaaataa gatccctatt ctgaacacct 4080 agcaataagt accataatat actttacctc ttcatcttcc tcatccaggt attttatttt 4140 aatactattc agatcaaatg aaacttttac ctacaaaaga aatacacatt taaaggcagg 4200 ttataatgta catagaagtc aaaggatgag ttgggcatat ttcattacat actaaatatt 4260 ttatatggtt aaaaaaatcc acaaaatcag aagacaacaa acaaccatca caacccacag 4320 caaagggtta atatctgcaa cacacccaga gtatcagcaa aactgctaat gatacaatta 4380 acaacccagg aaaaagtata cataaaattc atagaagaag tcagaacacc taacaaatac 4440 ctcagaagac tttcaaactt tctggtggtc agaacaatgc aaattgaaag caatgaaatg 4500 tcatctaatc agaacagcaa attgtgtgta tgtgtgtgag cacaaaaaat gggaagactt 4560 gggttctaga cacagctctg gcccattact agacataaaa ctgtgagcag gtcagttcac 4620 ctttgagctt cagttcttta atctgtaaaa taggtctaat atgtctgttt tgccgatctc 4680 acagtgttac cataaggatc aaattaaaaa tgaatatgca agttctttca aaatgtcatt 4740 caaatataaa aatattataa tacaggccag gcacagtggc tcatgtctgt aatcccagga 4800 ttttgggaag cagaggcagg cagatcgctt gagtccagga gttcgagacc agcctagcca 4860 acatggtgaa acttcgtctc taataaaaat acaaaaatta gctgggtgta gtggcgcagg 4920 cctgtattcc cagctactca agaggctgag gcaagagaat tgcttgaatc tgggaggcaa 4980 ggttgcagtg cgccaagatc atgccactgc actcccgcct gggtgataga gcgagactct 5040 gtctcaaaaa taaaataaaa aattggcccg gtgtggtggc tcatgcctgt aatcctagca 5100 atttgggagg ctgaggtgga aggatcgtga acctaggagt tgaagaccag cctgggcaac 5160 aaagccggac cctgtctcct taaaaaaatt aagttcaatt aaacattttt aaaaataata 5220 aaccagtcat tagaaccata aacctgtact gtttttgaca atgtaatgca ctgccctgta 5280 aaacactaca attaagactg ttattttaag gaccctgaag tctgtgaaga tcaggcactt 5340 ttttgaaacc ctaagataat tatcccccag ttttctccat tctttgtttc tacctagaac 5400 caagttcacc accaaaacgc agtcctgctg acgtcaagta ttcattcata tgacatgtaa 5460 ttactggggt cgttaaaatt tgggcagaat ctttgtcaat tcaccaggac cttaggcaaa 5520 aaatcaggaa aatgaagtga ctgactcagt ctgccaaaag cggatattct gaaataccac 5580 tttccaactt taagaaacac ttcctgccag gtgcggtggc tcacgcctat aatcccagca 5640 ctttgggagg ccgaggaagg cagatcacga ggtcaggaga tcgaggtcat cctggctaac 5700 gcggtgaaac ccccatctct actaaaaaca caaaaaatta gctgggcgtg atggcgggtg 5760 cctgtagtcc cagctactcg ggaggctgag gcaggagaat ggcgtgaacc cgggagacag 5820 agttcgcagt gcactagccg cgatcgtgcc actgcacttc aggctgggcg acagagcgag 5880 actcagtctc aaaaaaaaaa gaaaaaaaag aaacacactt ccctactcgt tagggaaatt 5940 aatcttcgtc tctttttctc aaattacaca attggaaatt aatttagata ttctggagct 6000 cctccagctg gtgggccaac taagagaaaa caggaagtgg gagattctag cttagctgga 6060 ccatatccag gtctccataa ggaactctct ttggctggca tgtaaaaaaa ttctttcagc 6120 aagagcatta atcttgaacg tgtgtaaaca cgaaagctat ggttaaccct acctgctcct 6180 taggtctaca gccagtagag tcagatagct gggtcctagg ccttcagctt tcataattga 6240 cattattgtt aagtccatgt gactgactca ccttgtcttg gcacaagtta gcttttcctc 6300 cacatcgatt tttttttctt tcagcctcaa caaaatccct ttaatgaaac aaacctggca 6360 acccgaactt tggttactgt ctccaccaga ggcctgtaca agccaagtta tccaagctga 6420 ggccgggagt ggtggctcat gcctgtaatc ccagcacttt gggaggccaa ggcaggagga 6480 tcgcttgagc tcaggagttc aagaccagcc tgggctggtc tttgagaaag cgagactttg 6540 tctcgaaaaa aaaaaaaaaa gtgtggcctg aaagttgagt gtttgacaaa aaggagaaac 6600 agtgcctttc caaaaccaaa ggtccctaac caagatctct ttaacggggt ctcgaaaaaa 6660 ggagaatggg atgagaagga tatatgggta gtgtcatttt ttaacttgca gatttcatcc 6720 tagtcttcca gttatcgttt cctagcactc catgttccca agatagtgtc accaccccaa 6780 ggactctctc tcattttctt tgcctgggcc ctctttctac tgaggagtcg tggccttcca 6840 tcagtagaag ccggatgttc ttgtgtccga aattggtggg ttcttggtct cactgacttc 6900 aagaatgaag ttgcggaccc tcacggtgag tggtacagtt cttaaagatg atgtgtccag 6960 agtttgttcc ttctgatgtt cggacgtgtt cagagttacc tccttctggt ggattcgtgg 7020 tctcgctggc ttcaggagtg aagctgcaga cctttgcggt gagtgttaca gctcttaagg 7080 cggcatgtct ggagtttgtt cgttcctccc gtctggagtt gttcattcct cctggtgggt 7140 tcgtggtctc gctggcttca ggagtgaagc tgcagacctc tgcggtcggt gttaccagca 7200 gataaatgct atgcggaccc aaagagtgag cagcagcaag atttattgca aagagcacaa 7260 gaacaaagct tccacagcgt ggaaggagac cagagcgggt tgctgctgct ggctcaggca 7320 gcctgcattt tttttttttt tttttttttt ttttgagatg gagtctccct ctgtcaccca 7380 ggctggaatg cagtggtgca atctgggctc actgcaagct ccgcctcccg ggttcacgcc 7440 attctcctgc ctcaacctcc ccagtagagg ggattacagg cacccaccac cgcacccagc 7500 taatattttg tctttttagt agagtcgggg tttcactgtg ttagccagga tggtctcgat 7560 ctcttgacct cgtgatccac ccctctaggc ctcccaaatt gctgggatta caggtgtgag 7620 ccactggcac ccagcggggc agcctgcttt tattccctta tctgacccca cccacatcct 7680 gttgattggt ccattttaca gagagctaat tggtccgttt tgacagggtg ctgattggtg 7740 catttacaat ccctgagcta gatatacaca gagtgctgat tggtgcattt acaatcctct 7800 agctagacat aaaaattctc caagtcccca ctacatttgc tagacacaga gcactgattg 7860 gtgcgtttac aaacctttag ctagacacag agtgctgatt ggtgcatttg caaaccttga 7920 gctagacaca gagcactgat tggtgcattt acaatccttt agctagacac agaagttctc 7980 caagtgccca ccagattagc tagatacaga gtgctgattg gtgcatcccc aaaccccaag 8040 ctagacacag agtgctgact ggtgcatata aaatcctcag gctagacata aaagttttcc 8100 aagtccccat ctgactcagg agcccagctg gcttcaccta gtggatcctg cgcagggctg 8160 tgccgggcgc ctgcactcct ctcagccctt gggcagtcga tgggaccggg cgctgaggag 8220 cagggggcgg tgcccgtcgg ggaggctcag gccacgctgg agctcacagg ggttgggagg 8280 gggctcgggc atggcgggct gcaggtcctg agccttgccc tgtgcagggc ggctggggcc 8340 cggtgagaat tcaagcgggg tgcaggcggg ccggcagtgc tgggggaccc ggcgcaccct 8400 ctgcagctgc tggcccgggt gctaggcccc tgactgcccg gggccggggg tgcggggccc 8460 gctgagcccg cgcccacctg gaactcgcgc tggctggcga gcgctgcgcg cagccccagt 8520 tcccacaccc gcctctccct ccacacttcc ccgcaagcag agggagccgg ctctggcttc 8580 ggccagccca gagaggggcc cccacagcgc agtggcgggc tgaagggctc ctccagcacg 8640 gccagaatgg acgccaaggc cgaggaggcg ccgagagcga gcgagggctg ctagcacgtt 8700 gtcacctcgc attctgaacc acagactctc caactctccg gcgcttttcg cccactcggt 8760 ccctcagaac acgaagggct ctctcatcct gtcactaaaa cgattagctg tccggagaca 8820 cggaaaaagt cgcccctctt ctttgcagga ttcctccctt gaacttctcc aaaccctctt 8880 agtgtgacgt gaccccaccc ctagctaacc caggctgctt ccttaccagc ttcccgcccc 8940 ctggggaggc ggcaatgcaa agaccgtccg ctgccagctc tgccgctatc tctgtggggt 9000 gaatctaaca tggcggacaa agacagtaac tagtcccgtt tctccgcgtt ttcgccaaga 9060 agattggctc ttaccacttg tccctcaaaa cgaccacccc attgactggt ggcgattgcg 9120 tcgacggaga cggggcaaaa gcaagctgaa cccgaaaaat aacaaacact ggggctgagg 9180 ggtggaacta cgagtgcgca gacatgggcc agagcgcatt tcccctgccc caggcaaatt 9240 cggcgctcac tgcgtccccg caggccactg accttacaag actacttgcc ccagactcct 9300 ggggctggat gggaattgta gtctccctaa agagttgtac gtatcttttt aaggcctagt 9360 ttctgctttc aaaatacgaa aacataacac tccagtccat aactgttgac aagtacaagc 9420 gcgcacaggt ctccaatcta tccactggat ttccgtgaga attgtgcccg ctctggtatt 9480 ggatgttcct ctccataaga ctacagtttc taaggaacac tgtggcgaag acctttcatt 9540 ccgcaacgca tgctggaaat aattatttcc ctccaccccc ccaacaatcc ttattactta 9600 tatttaccga aactggagac ctccattagg gcggaaagag tgggggattg ggacctcttc 9660 ttacgactgc tttggacaat aggtagcgat tctgaccttc gtacagcaat tactgtgatg 9720 caataagccg caactggaag agtagaggct agagggcagg cactttatgg caaactcagg 9780 tagaattctt cctcttccgt ctctttcctt ttacgtcatc cgggggcaga ctgggtggcc 9840 aatccagagc cccgagagac gcttggctct ttctgtccct cccatcctct gattgtacct 9900 tgatttcgta ttctgagagg ctgctgctta gcggtagccc cttggtttcc gtggcaacgg 9960 aaaagcgcgg gaattacaga taaattaaaa ctgcgactgc gcggcgtgag ctcgctgaga 10020 cttcctggac gggggacagg ctgtggggtt tctcagataa ctgggcccct gcgctcagga 10080 ggccttcacc ctctgctctg ggtaaaggta gtagagtccc gggaaaggga cagggggccc 10140 aagtgatgct ctggggtact ggcgtgggag agtggatttc cgaagctgac agatgggtat 10200 tctttgacgg ggggtagggg cggaacctga gaggcgtaag gcgttgtgaa ccctggggag 10260 gggggcagtt tgtaggtcgc gagggaagcg ctgaggatca ggaagggggc actgagtgtc 10320 cgtgggggaa tcctcgtgat aggaactgga atatgccttg agggggacac tatgtcttta 10380 aaaacgtcgg ctggtcatga ggtcaggagt tccagaccag cctgaccaac gtggtgaaac 10440 tccgtctcta ctaaaaatac aaaaattagc cgggcgtggt gccgctccag ctactcagga 10500 ggctgaggca ggagaatcgc tagaacccgg gaggcggagg ttgcagtgag ccgagatcgc 10560 gccattgcac tccagcctgg gcgacagagc gagactgtct caaaacaaaa caaaacaaaa 10620 caaaacaaaa aacaccggct ggtatgtatg agaggatggg accttgtgga agaagaggtg 10680 ccaggaatat gtctgggaag gggaggagac aggattttgt gggagggaga acttaagaac 10740 tggatccatt tgcgccattg agaaagcgca agagggaagt agaggagcgt cagtagtaac 10800 agatgctgcc ggcagggatg tgcttgagga ggatccagag atgagagcag gtcactggga 10860 aaggttaggg gcggggaggc cttgattggt gttggtttgg tcgttgttga ttttggtttt 10920 atgcaagaaa aagaaaacaa ccagaaacat tggagaaagc taaggctacc accacctacc 10980 cggtcagtca ctcctctgta g
Export	FASTA

SNP TSS CHIP-ON-CHIP TRANSFAC SITE

Sequence

gcgtcctaat caaccatccc aaacggcagt tggaagaaag ttcttgcagg cctgtgcttg 60
ggcttgaacg ctgggccggc cgctgcgctc tgtggctccc tgcaggcctg cggatcggcc 120
agggggctcc gatccttttg gaccgaggct gaagcaacgg ctgcaccaga gaaggccttc 180
tggctgaagg tggaagtgca cggggtccgc agaaccgcct aaggcgtctt caggcgtggg 240
ttaggaacta gcaggctctc ctttgtgctt cattccatgg ccagagcaag acacgtgggc 300
aagcccaaag ccaggggctg ggaaagtacc ctccacccac aacgaaacca tggcaagggg 360
tgggtgcatg tagggctgag gaattggggc caatagtcta tctatcccgt gaggagacct 420
gctgtggggg ttgcacagcc tgggtctgca agcttcactg ccctcggcct gggcgtcctg 480
tgctcctttg gcctctctgg gttaggaaag tatccctttt atctctgcaa aggtcagagt 540
cccagtgtct gctttcaaat ataaaaccag ctattggggg tatgaccctg aactgtatga 600
gggccgccct ttcagtaatt ctctctccag gagtgagaac ctccctttct caattttagg 660
ttagatgggt ctgagtgtgt ttagtgcagt tcatggttga gcaggaagat tagaaataag 720
gacatagaga caactatttt cttggtgtta aactcatttt aaacaaagtg gaaagtaaag 780
gatttagtag ggaaatcctt tcaccttggc aaaagtatag tctatctggt cacaactgcc 840
acagcatgat ccttggtggc ttggcacaag cattccctgt cctccatcaa gcccataatg 900
tccctcagta attccactgc attttttttg cagctgctgt gtgctggagc tgtggggaac 960
ccctcggtaa tctcttgtct gctttttagg aactcctatc tccagatctt cttttacttc 1020
ccaagccacc ccacttcttt gaaaggtctg caggcttgtc tacctcttct cagcttgctc 1080
tgcatgcctt ggggaagctc ttaaagcatg gatcatgaag gaggggggcg gaggagaggg 1140
aaatgcatgt ttccacaaat ggaccatgag cccaccaggc aggctctaga tggggaaaaa 1200
aaccccttac attatcatgt gacttgtaca agaaaaaagg tacctgcaaa gggtcaaggg 1260
accagagagg agaacttgag aggtattctg gaggaggcga cttttgatgt gagctttcta 1320
ggtgagtaaa gggcattgta gatgaaagga ctggctggta agtggccagc agatagaaat 1380
acaggctgag ctcaggggag ggtacaccca gaggtgggga ggaaggtagg aagtgaaaaa 1440
ggaggctggg cgtggtggct cacgcctgta atcctagcac tttgagtgtc cgaggcaggc 1500
ggatcacttg aggtcaggag tttgagacca gcctggccaa catggtgaaa ccccatctct 1560
actaaaacta caaaaattag ctgggtgtgg tggtgtgcgc ctgtagtccc agctactcag 1620
gaggctaagg tatgataatt gcttgaaccc gggaggcgga gcttgcagtg agcgaagatc 1680
atgccactgc actccagcct gggtaacaga gtgagatcct gtctcaaaaa aaaaaaaaaa 1740
ggaagtgaaa aaggaaaggg agaaggccag aatggaaagg agctaaagac agactgagca 1800
aggcagagtt ggaggccagc gcaggaaggg ctcaaaacat ttgcaaggac agttcacatc 1860
ccactggtat gtcagcttag atttaaagca ctacccagag ttattcaaag ccagacagga 1920
gaactgcagg catcagaatg ccctggggac gggtccaaaa tgcagaatcc taagccccta 1980
aagagtcact ctacgatgag atccaagaat ttgggctgga tcccacttct cctgtcccct 2040
gccctcacca ctgaggacct aaagcataat aaaaggggac aatctctgcc ctaaataatc 2100
ccttttggca gttactttct gttttcaaac ttcaaatctg tcctctggga ctaacctagg 2160
agatgaggga taagggaatt aacatttatg gaaaatggag gaacccacat aggcacctgt 2220
gttcacctaa tattccttac caagcagtgg gtgctgccat tatctccatt gtatggatga 2280
gaaaacaggc ttaaaagagg ttaatcgacc aggtgcggtg gctcacgcct gtaatcccag 2340
cactttggga gaccgaggac agcggatcac gatgtcaggg gatcgagacc atcctggcta 2400
acacagtgaa accccgtctc tactaaaaat acaaagaaaa aaaaaaatta gctgggcgtg 2460
ctggtgggcg cctgtagtcc aagctactca ggaagctgag gcaggagaat ggcgtgaacc 2520
cgggaggcag agcttgcagt gagccaagat cgcgccacta cactccagcc tgggcgacag 2580
agcgagactc catctcaaaa aaaaaaataa aataaaataa agaaaaaaag aattagctgg 2640
gcatggttgc gcacgtctgt agtcccaagc tactcgggag gctgaagcag gagaattgct 2700
tgaacccgga ggcagaggtt gcagtgagcc aagatcacgc cactgcactc cagcctggtg 2760
acagagcgag acttcgtctc taaaaaaaga aaaagaaaaa ggaaaaaaaa aaaaagaggt 2820
taagtaactt gggcgggggc ggccagagcc acagaactag taagtgatag aagtaggatt 2880
ctcacctagt tctttctgat gctagttgga gaggcagctt tgttcagtgg gttttagagc 2940
cagggctgct taggtttgga tctcacctct atcccatatt atttgctggg acttccttaa 3000
aacagtgtgg ggctcagggc aacccaatga gtatggggct aagacagctg ccaccgagtc 3060
agcatttttc acaggcccct cgagatagca ctgaagacag aaatttctaa attgaatttt 3120
attgatgttc aggaaagaga agtcagtcac aacccccctt ggccctcagc cccaagcaga 3180
gagcccagag tgtgtgacct caggcaagta ccaaaacctc tctgtgcctc agttcctcat 3240
ctgtaaattg gggcaaatgt cagttgatgt gaggattaaa tatgatgata tcctggctgg 3300
gcacaatggc tcatgcctgt aatcccataa ctttgggagg ctgaggccgc tggattgctt 3360
gaggccagga gttcaaaacc agcctggcca acatggtgaa accccatttc taccaaatat 3420
acaaaaatta gccaggcatg gtggtgcatg cctgtagtcc cagctacttg ggaggctgag 3480
gcacaagaat cgcttcaacc caggaagcag aggttgcagt gagctgagat tgcgccactg 3540
cactgcagcc tggatgacag agtgagactc tgtcccaaaa caaaaagaaa agcaaagcaa 3600
agaaagaaaa ggagaaaaga aaagaaaata aaaagctgat atcctttttt tttttttgag 3660
acggagtctc gctctgtcac cgaggctgaa gtgcagtggc acgatctcgg ctcactgcaa 3720
gctccgcctc ctgggttcac gccattctcc tgcctcagcc tcccaagtag ctaggactac 3780
aggcgcctgc tgccacattt ggctaatttt ttgtattttt agtagagacg gggttcaata 3840
aaatgaagcg aaatggggat gaaacataat gaaccacagc agttttctgt ccctactgtt 3900
cccacccttc tggggagcaa gatttcaatg gaatcttctg gtgcttctcc cgacatctct 3960
tgcatgtctc attgttttta ttattattat tattattttg agacacaaat gagctaagcg 4020
ctacttcgaa ttattaaagc ccatatcact ggagaaataa gatccctatt ctgaacacct 4080
agcaataagt accataatat actttacctc ttcatcttcc tcatccaggt attttatttt 4140
aatactattc agatcaaatg aaacttttac ctacaaaaga aatacacatt taaaggcagg 4200
ttataatgta catagaagtc aaaggatgag ttgggcatat ttcattacat actaaatatt 4260
ttatatggtt aaaaaaatcc acaaaatcag aagacaacaa acaaccatca caacccacag 4320
caaagggtta atatctgcaa cacacccaga gtatcagcaa aactgctaat gatacaatta 4380
acaacccagg aaaaagtata cataaaattc atagaagaag tcagaacacc taacaaatac 4440
ctcagaagac tttcaaactt tctggtggtc agaacaatgc aaattgaaag caatgaaatg 4500
tcatctaatc agaacagcaa attgtgtgta tgtgtgtgag cacaaaaaat gggaagactt 4560
gggttctaga cacagctctg gcccattact agacataaaa ctgtgagcag gtcagttcac 4620
ctttgagctt cagttcttta atctgtaaaa taggtctaat atgtctgttt tgccgatctc 4680
acagtgttac cataaggatc aaattaaaaa tgaatatgca agttctttca aaatgtcatt 4740
caaatataaa aatattataa tacaggccag gcacagtggc tcatgtctgt aatcccagga 4800
ttttgggaag cagaggcagg cagatcgctt gagtccagga gttcgagacc agcctagcca 4860
acatggtgaa acttcgtctc taataaaaat acaaaaatta gctgggtgta gtggcgcagg 4920
cctgtattcc cagctactca agaggctgag gcaagagaat tgcttgaatc tgggaggcaa 4980
ggttgcagtg cgccaagatc atgccactgc actcccgcct gggtgataga gcgagactct 5040
gtctcaaaaa taaaataaaa aattggcccg gtgtggtggc tcatgcctgt aatcctagca 5100
atttgggagg ctgaggtgga aggatcgtga acctaggagt tgaagaccag cctgggcaac 5160
aaagccggac cctgtctcct taaaaaaatt aagttcaatt aaacattttt aaaaataata 5220
aaccagtcat tagaaccata aacctgtact gtttttgaca atgtaatgca ctgccctgta 5280
aaacactaca attaagactg ttattttaag gaccctgaag tctgtgaaga tcaggcactt 5340
ttttgaaacc ctaagataat tatcccccag ttttctccat tctttgtttc tacctagaac 5400
caagttcacc accaaaacgc agtcctgctg acgtcaagta ttcattcata tgacatgtaa 5460
ttactggggt cgttaaaatt tgggcagaat ctttgtcaat tcaccaggac cttaggcaaa 5520
aaatcaggaa aatgaagtga ctgactcagt ctgccaaaag cggatattct gaaataccac 5580
tttccaactt taagaaacac ttcctgccag gtgcggtggc tcacgcctat aatcccagca 5640
ctttgggagg ccgaggaagg cagatcacga ggtcaggaga tcgaggtcat cctggctaac 5700
gcggtgaaac ccccatctct actaaaaaca caaaaaatta gctgggcgtg atggcgggtg 5760
cctgtagtcc cagctactcg ggaggctgag gcaggagaat ggcgtgaacc cgggagacag 5820
agttcgcagt gcactagccg cgatcgtgcc actgcacttc aggctgggcg acagagcgag 5880
actcagtctc aaaaaaaaaa gaaaaaaaag aaacacactt ccctactcgt tagggaaatt 5940
aatcttcgtc tctttttctc aaattacaca attggaaatt aatttagata ttctggagct 6000
cctccagctg gtgggccaac taagagaaaa caggaagtgg gagattctag cttagctgga 6060
ccatatccag gtctccataa ggaactctct ttggctggca tgtaaaaaaa ttctttcagc 6120
aagagcatta atcttgaacg tgtgtaaaca cgaaagctat ggttaaccct acctgctcct 6180
taggtctaca gccagtagag tcagatagct gggtcctagg ccttcagctt tcataattga 6240
cattattgtt aagtccatgt gactgactca ccttgtcttg gcacaagtta gcttttcctc 6300
cacatcgatt tttttttctt tcagcctcaa caaaatccct ttaatgaaac aaacctggca 6360
acccgaactt tggttactgt ctccaccaga ggcctgtaca agccaagtta tccaagctga 6420
ggccgggagt ggtggctcat gcctgtaatc ccagcacttt gggaggccaa ggcaggagga 6480
tcgcttgagc tcaggagttc aagaccagcc tgggctggtc tttgagaaag cgagactttg 6540
tctcgaaaaa aaaaaaaaaa gtgtggcctg aaagttgagt gtttgacaaa aaggagaaac 6600
agtgcctttc caaaaccaaa ggtccctaac caagatctct ttaacggggt ctcgaaaaaa 6660
ggagaatggg atgagaagga tatatgggta gtgtcatttt ttaacttgca gatttcatcc 6720
tagtcttcca gttatcgttt cctagcactc catgttccca agatagtgtc accaccccaa 6780
ggactctctc tcattttctt tgcctgggcc ctctttctac tgaggagtcg tggccttcca 6840
tcagtagaag ccggatgttc ttgtgtccga aattggtggg ttcttggtct cactgacttc 6900
aagaatgaag ttgcggaccc tcacggtgag tggtacagtt cttaaagatg atgtgtccag 6960
agtttgttcc ttctgatgtt cggacgtgtt cagagttacc tccttctggt ggattcgtgg 7020
tctcgctggc ttcaggagtg aagctgcaga cctttgcggt gagtgttaca gctcttaagg 7080
cggcatgtct ggagtttgtt cgttcctccc gtctggagtt gttcattcct cctggtgggt 7140
tcgtggtctc gctggcttca ggagtgaagc tgcagacctc tgcggtcggt gttaccagca 7200
gataaatgct atgcggaccc aaagagtgag cagcagcaag atttattgca aagagcacaa 7260
gaacaaagct tccacagcgt ggaaggagac cagagcgggt tgctgctgct ggctcaggca 7320
gcctgcattt tttttttttt tttttttttt ttttgagatg gagtctccct ctgtcaccca 7380
ggctggaatg cagtggtgca atctgggctc actgcaagct ccgcctcccg ggttcacgcc 7440
attctcctgc ctcaacctcc ccagtagagg ggattacagg cacccaccac cgcacccagc 7500
taatattttg tctttttagt agagtcgggg tttcactgtg ttagccagga tggtctcgat 7560
ctcttgacct cgtgatccac ccctctaggc ctcccaaatt gctgggatta caggtgtgag 7620
ccactggcac ccagcggggc agcctgcttt tattccctta tctgacccca cccacatcct 7680
gttgattggt ccattttaca gagagctaat tggtccgttt tgacagggtg ctgattggtg 7740
catttacaat ccctgagcta gatatacaca gagtgctgat tggtgcattt acaatcctct 7800
agctagacat aaaaattctc caagtcccca ctacatttgc tagacacaga gcactgattg 7860
gtgcgtttac aaacctttag ctagacacag agtgctgatt ggtgcatttg caaaccttga 7920
gctagacaca gagcactgat tggtgcattt acaatccttt agctagacac agaagttctc 7980
caagtgccca ccagattagc tagatacaga gtgctgattg gtgcatcccc aaaccccaag 8040
ctagacacag agtgctgact ggtgcatata aaatcctcag gctagacata aaagttttcc 8100
aagtccccat ctgactcagg agcccagctg gcttcaccta gtggatcctg cgcagggctg 8160
tgccgggcgc ctgcactcct ctcagccctt gggcagtcga tgggaccggg cgctgaggag 8220
cagggggcgg tgcccgtcgg ggaggctcag gccacgctgg agctcacagg ggttgggagg 8280
gggctcgggc atggcgggct gcaggtcctg agccttgccc tgtgcagggc ggctggggcc 8340
cggtgagaat tcaagcgggg tgcaggcggg ccggcagtgc tgggggaccc ggcgcaccct 8400
ctgcagctgc tggcccgggt gctaggcccc tgactgcccg gggccggggg tgcggggccc 8460
gctgagcccg cgcccacctg gaactcgcgc tggctggcga gcgctgcgcg cagccccagt 8520
tcccacaccc gcctctccct ccacacttcc ccgcaagcag agggagccgg ctctggcttc 8580
ggccagccca gagaggggcc cccacagcgc agtggcgggc tgaagggctc ctccagcacg 8640
gccagaatgg acgccaaggc cgaggaggcg ccgagagcga gcgagggctg ctagcacgtt 8700
gtcacctcgc attctgaacc acagactctc caactctccg gcgcttttcg cccactcggt 8760
ccctcagaac acgaagggct ctctcatcct gtcactaaaa cgattagctg tccggagaca 8820
cggaaaaagt cgcccctctt ctttgcagga ttcctccctt gaacttctcc aaaccctctt 8880
agtgtgacgt gaccccaccc ctagctaacc caggctgctt ccttaccagc ttcccgcccc 8940
ctggggaggc ggcaatgcaa agaccgtccg ctgccagctc tgccgctatc tctgtggggt 9000
gaatctaaca tggcggacaa agacagtaac tagtcccgtt tctccgcgtt ttcgccaaga 9060
agattggctc ttaccacttg tccctcaaaa cgaccacccc attgactggt ggcgattgcg 9120
tcgacggaga cggggcaaaa gcaagctgaa cccgaaaaat aacaaacact ggggctgagg 9180
ggtggaacta cgagtgcgca gacatgggcc agagcgcatt tcccctgccc caggcaaatt 9240
cggcgctcac tgcgtccccg caggccactg accttacaag actacttgcc ccagactcct 9300
ggggctggat gggaattgta gtctccctaa agagttgtac gtatcttttt aaggcctagt 9360
ttctgctttc aaaatacgaa aacataacac tccagtccat aactgttgac aagtacaagc 9420
gcgcacaggt ctccaatcta tccactggat ttccgtgaga attgtgcccg ctctggtatt 9480
ggatgttcct ctccataaga ctacagtttc taaggaacac tgtggcgaag acctttcatt 9540
ccgcaacgca tgctggaaat aattatttcc ctccaccccc ccaacaatcc ttattactta 9600
tatttaccga aactggagac ctccattagg gcggaaagag tgggggattg ggacctcttc 9660
ttacgactgc tttggacaat aggtagcgat tctgaccttc gtacagcaat tactgtgatg 9720
caataagccg caactggaag agtagaggct agagggcagg cactttatgg caaactcagg 9780
tagaattctt cctcttccgt ctctttcctt ttacgtcatc cgggggcaga ctgggtggcc 9840
aatccagagc cccgagagac gcttggctct ttctgtccct cccatcctct gattgtacct 9900
tgatttcgta ttctgagagg ctgctgctta gcggtagccc cttggtttcc gtggcaacgg 9960
aaaagcgcgg gaattacaga taaattaaaa ctgcgactgc gcggcgtgag ctcgctgaga 10020
cttcctggac gggggacagg ctgtggggtt tctcagataa ctgggcccct gcgctcagga 10080
ggccttcacc ctctgctctg ggtaaaggta gtagagtccc gggaaaggga cagggggccc 10140
aagtgatgct ctggggtact ggcgtgggag agtggatttc cgaagctgac agatgggtat 10200
tctttgacgg ggggtagggg cggaacctga gaggcgtaag gcgttgtgaa ccctggggag 10260
gggggcagtt tgtaggtcgc gagggaagcg ctgaggatca ggaagggggc actgagtgtc 10320
cgtgggggaa tcctcgtgat aggaactgga atatgccttg agggggacac tatgtcttta 10380
aaaacgtcgg ctggtcatga ggtcaggagt tccagaccag cctgaccaac gtggtgaaac 10440
tccgtctcta ctaaaaatac aaaaattagc cgggcgtggt gccgctccag ctactcagga 10500
ggctgaggca ggagaatcgc tagaacccgg gaggcggagg ttgcagtgag ccgagatcgc 10560
gccattgcac tccagcctgg gcgacagagc gagactgtct caaaacaaaa caaaacaaaa 10620
caaaacaaaa aacaccggct ggtatgtatg agaggatggg accttgtgga agaagaggtg 10680
ccaggaatat gtctgggaag gggaggagac aggattttgt gggagggaga acttaagaac 10740
tggatccatt tgcgccattg agaaagcgca agagggaagt agaggagcgt cagtagtaac 10800
agatgctgcc ggcagggatg tgcttgagga ggatccagag atgagagcag gtcactggga 10860
aaggttaggg gcggggaggc cttgattggt gttggtttgg tcgttgttga ttttggtttt 10920
atgcaagaaa aagaaaacaa ccagaaacat tggagaaagc taaggctacc accacctacc 10980
cggtcagtca ctcctctgta g

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