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TRANSFAC® Professional 2015.3 Public
Factors 22,389 6,133
miRNAs 1,179 n/a
DNA sites 45,180 7,915
mRNA sites 20,061 n/a
Factor-DNA-Site links 60,789 yes
miRNA-mRNA site links 56,276 n/a
Genes 82,439 2,397
ChIP-chip/Seq Fragments 13,837,264 n/a
Matrices 5,443 398
References 35,166 flat file only
Promoter Sequences 278,083 n/a
Search Options
Use of Boolean operators / advanced filtering yes no
Customizable / exportable search results yes no
Export FASTA sequences yes no
Analysis Capabilities
Analyze included promoters yes no
Visualize gene regulation networks yes no
Data Download
Flat file format yes no
Martch, Patch, Catch algorithms yes no
Match plug-in for CLC bio’s Genomics Workbench yes no