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TRANSFAC® Professional Public
Data
Factors 21,215 6,133
miRNAs 894 n/a
DNA sites 38,283 7,915
mRNA sites 15,895 n/a
Factor DNA 51,769 yes
miRNA-mRNA site links 49,541 n/a
Genes 79,866 2,397
ChIP-chip/Seq Fragments 2,332,432 n/a
Matrices 5,551 398
References 29,681 flat file only
Promoter Sequences 277,337 n/a
Search Options
Use of Boolean operators / advanced filtering yes no
Customizable / exportable search results yes no
Export FASTA sequences yes no
Analysis Capabilities
Analyze included promoters yes no
Visualize gene regulation networks yes no
Data Download
Flat file format yes no
Martch, Patch, Catch algorithms yes no
Match plug-in for CLC bio’s Genomics Workbench yes no