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TRANSFAC® Professional 2016.2 Public
Factors 23,277 6,133
miRNAs 1,222 n/a
DNA sites 47,775 7,915
mRNA sites 22,175 n/a
Factor-DNA-Site links 64,058 yes
miRNA-mRNA site links 57,322 n/a
Genes 82,722 2,397
ChIP-chip/Seq Fragments 14,317,019 n/a
Matrices 6,563 398
References 36,367 flat file only
Promoter Sequences 323,775 n/a
Search Options
Use of Boolean operators / advanced filtering yes no
Customizable / exportable search results yes no
Export FASTA sequences yes no
Analysis Capabilities
Analyze included promoters yes no
Visualize gene regulation networks yes no
Data Download
Flat file format yes no
Martch, Patch, Catch algorithms yes no
Match plug-in for CLC bio’s Genomics Workbench yes no